General Information of This Peptide
Peptide ID
PEP00073
Peptide Name
Cyclic NGR 3
Structure
Sequence
KNGRCGG
Peptide Type
Cyclic
Receptor Name
Aminopeptidase N (ANPEP)
 Receptor Info 
PDC Transmembrane Types Cell targeting peptides (CTPs)
Formula
C27H46N12O10S
Isosmiles
[H]NCCCC[C@@H]1NC(=O)CSC[C@@H](C(=O)NCC(=O)NCC(=O)O)NC(=O)[C@H](CCC/N=C(\N)N[H])NC(=O)CNC(=O)[C@H](CC(=O)N[H])NC1=O
InChI
InChI=1S/C27H46N12O10S/c28-6-2-1-4-14-25(48)38-16(8-18(29)40)23(46)35-10-20(42)36-15(5-3-7-32-27(30)31)26(49)39-17(12-50-13-21(43)37-14)24(47)34-9-19(41)33-11-22(44)45/h14-17H,1-13,28H2,(H2,29,40)(H,33,41)(H,34,47)(H,35,46)(H,36,42)(H,37,43)(H,38,48)(H,39,49)(H,44,45)(H4,30,31,32)/t14-,15-,16-,17-/m0/s1
InChIKey
WOIMSHMUWSTVAR-QAETUUGQSA-N
Pharmaceutical Properties
Molecule Weight
730.806
Polar area
374.51
Complexity
730.3180567
xlogp Value
-6.8364
Heavy Count
50
Rot Bonds
16
Hbond acc
12
Hbond Donor
12
Each Peptide-drug Conjugate Related to This Peptide
Full Information of The Activity Data of The PDC(s) Related to This Peptide
Cyclic NGR peptidedaunomycin conjugates 3 [Investigative]
Revealed Based on the Cell Line Data
Click To Hide/Show 4 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Tumor
Efficacy Data Half Maximal Inhibitory Concentration (IC50)
3.3 ± 0.6 µM
Administration Time 72 h
Description
In contrast, conjugate 2 (containing a disulfide bridge) showed preferential toxicity to HT-1080 cells in the cytostatic experiments, resulting in the highest selectivity. The antitumor effect of 2 increased in time (72 h treatment), but its selectivity decreased significantly. In comparison to conjugates 3 (thioether linkage) and 5 (amide bond), both containing free Lys in the cycle, conjugate 5 had slightly better activity against HT-1080 cells. However, the selectivity of conjugate 5 to CD13 receptors (as judged by the relative toxicity against the two cell lines) was not significant after 6 h treatment, whereas it was significantly more toxic to HT-1080 cells in the 72 h experiment. This can also be explained by its higher chemostability that results in longer exposure the cells to the unmodified NGR peptide-drug conjugate. In contrast, their analogs in which the drug molecule is connected to the side chain of Lys in the cycle (conjugates 4 and 6) were more specific but less toxic, especially in the cytotoxicity experiments. Interestingly, there was no correlation between the specificity and the chemostability of the conjugates.

   Click to Show/Hide
In Vitro Model Fibrosarcoma HT-1080 cell CVCL_0317
Experiment 2 Reporting the Activity Data of This PDC [1]
Indication Tumor
Efficacy Data Half Maximal Inhibitory Concentration (IC50)
5.7 ± 0.9 µM
Administration Time 72 h
Description
In contrast, conjugate 2 (containing a disulfide bridge) showed preferential toxicity to HT-1080 cells in the cytostatic experiments, resulting in the highest selectivity. The antitumor effect of 2 increased in time (72 h treatment), but its selectivity decreased significantly. In comparison to conjugates 3 (thioether linkage) and 5 (amide bond), both containing free Lys in the cycle, conjugate 5 had slightly better activity against HT-1080 cells. However, the selectivity of conjugate 5 to CD13 receptors (as judged by the relative toxicity against the two cell lines) was not significant after 6 h treatment, whereas it was significantly more toxic to HT-1080 cells in the 72 h experiment. This can also be explained by its higher chemostability that results in longer exposure the cells to the unmodified NGR peptide-drug conjugate. In contrast, their analogs in which the drug molecule is connected to the side chain of Lys in the cycle (conjugates 4 and 6) were more specific but less toxic, especially in the cytotoxicity experiments. Interestingly, there was no correlation between the specificity and the chemostability of the conjugates.

   Click to Show/Hide
In Vitro Model Colon adenocarcinoma CD13-negative HT29 cell CVCL_0320
Experiment 3 Reporting the Activity Data of This PDC [1]
Indication Tumor
Efficacy Data Half Maximal Inhibitory Concentration (IC50)
8.0 ± 0.1 µM
Administration Time 6 h
Description
In contrast, conjugate 2 (containing a disulfide bridge) showed preferential toxicity to HT-1080 cells in the cytostatic experiments, resulting in the highest selectivity. The antitumor effect of 2 increased in time (72 h treatment), but its selectivity decreased significantly. In comparison to conjugates 3 (thioether linkage) and 5 (amide bond), both containing free Lys in the cycle, conjugate 5 had slightly better activity against HT-1080 cells. However, the selectivity of conjugate 5 to CD13 receptors (as judged by the relative toxicity against the two cell lines) was not significant after 6 h treatment, whereas it was significantly more toxic to HT-1080 cells in the 72 h experiment. This can also be explained by its higher chemostability that results in longer exposure the cells to the unmodified NGR peptide-drug conjugate. In contrast, their analogs in which the drug molecule is connected to the side chain of Lys in the cycle (conjugates 4 and 6) were more specific but less toxic, especially in the cytotoxicity experiments. Interestingly, there was no correlation between the specificity and the chemostability of the conjugates.

   Click to Show/Hide
In Vitro Model Fibrosarcoma HT-1080 cell CVCL_0317
Experiment 4 Reporting the Activity Data of This PDC [1]
Indication Tumor
Efficacy Data Half Maximal Inhibitory Concentration (IC50)
10.3 ± 2.2 µM
Administration Time 6 h
Description
In contrast, conjugate 2 (containing a disulfide bridge) showed preferential toxicity to HT-1080 cells in the cytostatic experiments, resulting in the highest selectivity. The antitumor effect of 2 increased in time (72 h treatment), but its selectivity decreased significantly. In comparison to conjugates 3 (thioether linkage) and 5 (amide bond), both containing free Lys in the cycle, conjugate 5 had slightly better activity against HT-1080 cells. However, the selectivity of conjugate 5 to CD13 receptors (as judged by the relative toxicity against the two cell lines) was not significant after 6 h treatment, whereas it was significantly more toxic to HT-1080 cells in the 72 h experiment. This can also be explained by its higher chemostability that results in longer exposure the cells to the unmodified NGR peptide-drug conjugate. In contrast, their analogs in which the drug molecule is connected to the side chain of Lys in the cycle (conjugates 4 and 6) were more specific but less toxic, especially in the cytotoxicity experiments. Interestingly, there was no correlation between the specificity and the chemostability of the conjugates.

   Click to Show/Hide
In Vitro Model Colon adenocarcinoma CD13-negative HT29 cell CVCL_0320
References
Ref 1 NGR-peptide-drug conjugates with dual targeting properties. PLoS One. 2017 Jun 2;12(6):e0178632. doi: 10.1371/journal.pone.0178632. eCollection 2017.