General Information of This Linker
Linker ID
LIN00023
Linker Name
Alkyne-Triazole
Structure
Formula
C6H9N3O2
#Ro5 Violations (Lipinski): 0 Molecular Weight (mw) 155.15
Lipid-water partition coefficient (xlogp) -0.3
Hydrogen Bond Donor Count (hbonddonor) 2
Hydrogen Bond Acceptor Count (hbondacc) 4
Rotatable Bond Count (rotbonds) 4
PubChem CID
53959517
Canonical smiles
C1=NNN=C1CCCC(=O)O
InChI
InChI=1S/C6H9N3O2/c10-6(11)3-1-2-5-4-7-9-8-5/h4H,1-3H2,(H,10,11)(H,7,8,9)
InChIKey
JJYUJRZNPOGWAM-UHFFFAOYSA-N
IUPAC Name
4-(2H-triazol-4-yl)butanoic acid
Each Peptide-drug Conjugate Related to This Linker
Full Information of The Activity Data of The PDC(s) Related to This Linker
PDIP-alk-PQ [Investigative]
Obtained from the Model Organism Data
Click To Hide/Show 1 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Malaria
Efficacy Data Half Maximal Inhibitory Concentration (IC50)
12.9 µM
Administration Time 18-24 h
Evaluation Method Flow cytometry assay
MOA of PDC
As a proof of concept, we aimed to produce first-generation PDCs by conjugating the antimalarial drug primaquine (PQ) onto PDIP. Although PQ is one of the few drugs without clinically relevant resistance, it does not have widespread use because it causes hemolysis in individuals who are deficient in glucose-6-phosphate dehydrogenase (G6PD), a genetic trait common in malaria-endemic areas. Furthermore, PQ is metabolized into carboxyprimaquine in the body, which does not have any activity against the parasite. The proposed PDC approach provides the potential to deliver PQ directly to the parasite, which could prevent its interaction with healthy tissues and slow the conversion of PQ into inactive byproducts. Further, the combination of the peptide and drug, each with distinct antiplasmodial mechanisms of action, provides the potential to avoid the formation of drug-resistant parasites. Herein, we report the design, synthesis, and biological evaluation of a library of PDIP-PQ conjugates. Various design elements of the PDCs were probed to investigate their effect on biological activity, including: (i) the location of the PDIP conjugation site, (ii) the hydrophilicity of the linker between the peptide and drug, (iii) the spacing between the peptide and drug, and (iv) whether the linker can be cleaved to release the drug cargo under conditions which mimic the intracellular environment of infected RBCs. This work demonstrates that conjugation within the flexible interhelix spacer of PDIP and incorporation of traceless cleavable linkersbearing either a disulfide or trioxolane moietyare important for maintaining the low micromolar potency of the PQ drug cargo against P. falciparum.

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Description
The six PDIP-PQ conjugates were analyzed for their ability to inhibit the in vitro growth of P. falciparum asexual blood stage parasites (strain 3D7) in RBCs and were compared to the activity of the parent drug and peptide. We were encouraged to discover that most of the PDIP-PQ PDCs retained antiplasmodial activity similar to PDIP, with IC50 values in the low micromolar range. Notably, the various design elements probed provided valuable information regarding which PDC characteristics can be modified to improve activity.

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In Vivo Model Plasmodium falciparum 3D7.
[GG]PDIP-alk-PQ [Investigative]
Obtained from the Model Organism Data
Click To Hide/Show 1 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Malaria
Efficacy Data Half Maximal Inhibitory Concentration (IC50)
22.5 µM
Administration Time 18-24 h
Evaluation Method Flow cytometry assay
MOA of PDC
As a proof of concept, we aimed to produce first-generation PDCs by conjugating the antimalarial drug primaquine (PQ) onto PDIP. Although PQ is one of the few drugs without clinically relevant resistance, it does not have widespread use because it causes hemolysis in individuals who are deficient in glucose-6-phosphate dehydrogenase (G6PD), a genetic trait common in malaria-endemic areas. Furthermore, PQ is metabolized into carboxyprimaquine in the body, which does not have any activity against the parasite. The proposed PDC approach provides the potential to deliver PQ directly to the parasite, which could prevent its interaction with healthy tissues and slow the conversion of PQ into inactive byproducts. Further, the combination of the peptide and drug, each with distinct antiplasmodial mechanisms of action, provides the potential to avoid the formation of drug-resistant parasites. Herein, we report the design, synthesis, and biological evaluation of a library of PDIP-PQ conjugates. Various design elements of the PDCs were probed to investigate their effect on biological activity, including: (i) the location of the PDIP conjugation site, (ii) the hydrophilicity of the linker between the peptide and drug, (iii) the spacing between the peptide and drug, and (iv) whether the linker can be cleaved to release the drug cargo under conditions which mimic the intracellular environment of infected RBCs. This work demonstrates that conjugation within the flexible interhelix spacer of PDIP and incorporation of traceless cleavable linkersbearing either a disulfide or trioxolane moietyare important for maintaining the low micromolar potency of the PQ drug cargo against P. falciparum.

   Click to Show/Hide
Description
The six PDIP-PQ conjugates were analyzed for their ability to inhibit the in vitro growth of P. falciparum asexual blood stage parasites (strain 3D7) in RBCs and were compared to the activity of the parent drug and peptide. We were encouraged to discover that most of the PDIP-PQ PDCs retained antiplasmodial activity similar to PDIP, with IC50 values in the low micromolar range. Notably, the various design elements probed provided valuable information regarding which PDC characteristics can be modified to improve activity.

   Click to Show/Hide
In Vivo Model Plasmodium falciparum 3D7.
EETI-2.5Z-amide -gemcitabine [Investigative]
Revealed Based on the Cell Line Data
Click To Hide/Show 2 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [2]
Indication Glioblastoma
Efficacy Data Half Maximal Inhibitory Concentration (IC50)
2.8 ± 0.2 nM
Evaluation Method CCK-8 assay
Description
Cell proliferation was quantified 4 d after treatment with each compoundusing CCK-8 colorimetric assays and compared to the untreated control.
In Vitro Model Glioblastoma U-87MG cell CVCL_0022
Experiment 2 Reporting the Activity Data of This PDC [2]
Indication Glioblastoma
Efficacy Data Half Maximal Effective Concentration (EC50)
8.9 ± 1.2 nM
Evaluation Method CCK-8 assay
Description
Cell proliferation was quantified 4 d after treatment with each compoundusing CCK-8 colorimetric assays and compared to the untreated control.
In Vitro Model Glioblastoma U-87MG cell CVCL_0022
References
Ref 1 Development of Antiplasmodial Peptide-Drug Conjugates Using a Human Protein-Derived Cell-Penetrating Peptide with Selectivity for Infected Cells. Bioconjug Chem. 2023 Jun 21;34(6):1105-1113. doi: 10.1021/acs.bioconjchem.3c00147. Epub 2023 May 26.
Ref 2 Integrin-Targeting Knottin Peptide-Drug Conjugates Are Potent Inhibitors of Tumor Cell Proliferation. Angew Chem Int Ed Engl. 2016 Aug 16;55(34):9894-7. doi: 10.1002/anie.201603488. Epub 2016 Jun 15.