General Information of This Peptide-drug Conjugate (PDC)
PDC ID
PDC_00125
PDC Name
De Novo Cyclic Peptide (DNCP)-β-naloxamine (NalA) conjugates 1
PDC Status
Investigative
Indication
In total 1 Indication(s)
Pain
Structure
Peptide Name
YAyITCTF
 Peptide Info 
Receptor Name
Kappa-type opioid receptor (OPRK1)
 Receptor Info 
Drug Name
β-Naloxamine
 Drug Info 
Therapeutic Target
Kappa-type opioid receptor (OPRK1)
 Target Info 
Linker Name
Amide bond
 Linker Info 
Peptide Modified Type
Cyclization modification
Modified Segment
Side-chain cyclization
Formula
C67H84N10O16S
#Ro5 Violations (Lipinski): 4 Molecular Weight 1317.53
Lipid-water partition coefficient (xlogp) 0.4026
Hydrogen Bond Donor Count (hbonddonor) 15
Hydrogen Bond Acceptor Count (hbondacc) 18
Rotatable Bond Count (rotbonds) 22
Full List of Activity Data of This Peptide-drug Conjugate
Discovered Using Cell Line-derived Xenograft Model
Click To Hide/Show 7 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
0.1 ± 0.0 x 10-9 mol
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
The TRUPATH screening platform has been developed as an alternative to cAMP second messenger assays to minimize signal overamplification35. Intriguingly, in contrast to U50,488 and MP1104, but similar to the mixed-action KOR agonist pentazocine, DNCP--NalA(1) exhibited KOR partial agonism at Gi2, Gi3, GoA, GoB and Ggastducin subtypes with Emax values ranging from 48% to 77%, whereas it elicited full agonism at Gi1 and Gz with Emax values of 81% and 101%, respectively. The highest potency in the picomolar range was observed at Gz subtype for DNCP--NalA(1), U50,488 and MP1104, while pentazocine revealed the least variation in potency and efficacy across the transducerome.

   Click to Show/Hide
In Vivo Model Experiments were performed in male SWISS mice. Radioligand binding (n=3) and functional cAMP assays (n=3-4) of DNCP-beta-NalA conjugates were performed on HEK293T cell membranes stably expressing mouse KOR.
Experiment 2 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
0.7 ± 0.2 x 10-9 mol
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
The TRUPATH screening platform has been developed as an alternative to cAMP second messenger assays to minimize signal overamplification35. Intriguingly, in contrast to U50,488 and MP1104, but similar to the mixed-action KOR agonist pentazocine, DNCP--NalA(1) exhibited KOR partial agonism at Gi2, Gi3, GoA, GoB and Ggastducin subtypes with Emax values ranging from 48% to 77%, whereas it elicited full agonism at Gi1 and Gz with Emax values of 81% and 101%, respectively. The highest potency in the picomolar range was observed at Gz subtype for DNCP--NalA(1), U50,488 and MP1104, while pentazocine revealed the least variation in potency and efficacy across the transducerome.

   Click to Show/Hide
In Vivo Model Experiments were performed in male SWISS mice. Radioligand binding (n=3) and functional cAMP assays (n=3-4) of DNCP-beta-NalA conjugates were performed on HEK293T cell membranes stably expressing mouse KOR.
Experiment 3 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
0.9 ± 0.4 x 10-9 mol
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
The TRUPATH screening platform has been developed as an alternative to cAMP second messenger assays to minimize signal overamplification35. Intriguingly, in contrast to U50,488 and MP1104, but similar to the mixed-action KOR agonist pentazocine, DNCP--NalA(1) exhibited KOR partial agonism at Gi2, Gi3, GoA, GoB and Ggastducin subtypes with Emax values ranging from 48% to 77%, whereas it elicited full agonism at Gi1 and Gz with Emax values of 81% and 101%, respectively. The highest potency in the picomolar range was observed at Gz subtype for DNCP--NalA(1), U50,488 and MP1104, while pentazocine revealed the least variation in potency and efficacy across the transducerome.

   Click to Show/Hide
In Vivo Model Experiments were performed in male SWISS mice. Radioligand binding (n=3) and functional cAMP assays (n=3-4) of DNCP-beta-NalA conjugates were performed on HEK293T cell membranes stably expressing mouse KOR.
Experiment 4 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
1.4 ± 0.3 x 10-9 mol
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
The TRUPATH screening platform has been developed as an alternative to cAMP second messenger assays to minimize signal overamplification35. Intriguingly, in contrast to U50,488 and MP1104, but similar to the mixed-action KOR agonist pentazocine, DNCP--NalA(1) exhibited KOR partial agonism at Gi2, Gi3, GoA, GoB and Ggastducin subtypes with Emax values ranging from 48% to 77%, whereas it elicited full agonism at Gi1 and Gz with Emax values of 81% and 101%, respectively. The highest potency in the picomolar range was observed at Gz subtype for DNCP--NalA(1), U50,488 and MP1104, while pentazocine revealed the least variation in potency and efficacy across the transducerome.

   Click to Show/Hide
In Vivo Model Experiments were performed in male SWISS mice. Radioligand binding (n=3) and functional cAMP assays (n=3-4) of DNCP-beta-NalA conjugates were performed on HEK293T cell membranes stably expressing mouse KOR.
Experiment 5 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
1.7 ± 0.5 x 10-9 mol
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
The TRUPATH screening platform has been developed as an alternative to cAMP second messenger assays to minimize signal overamplification35. Intriguingly, in contrast to U50,488 and MP1104, but similar to the mixed-action KOR agonist pentazocine, DNCP--NalA(1) exhibited KOR partial agonism at Gi2, Gi3, GoA, GoB and Ggastducin subtypes with Emax values ranging from 48% to 77%, whereas it elicited full agonism at Gi1 and Gz with Emax values of 81% and 101%, respectively. The highest potency in the picomolar range was observed at Gz subtype for DNCP--NalA(1), U50,488 and MP1104, while pentazocine revealed the least variation in potency and efficacy across the transducerome.

   Click to Show/Hide
In Vivo Model Experiments were performed in male SWISS mice. Radioligand binding (n=3) and functional cAMP assays (n=3-4) of DNCP-beta-NalA conjugates were performed on HEK293T cell membranes stably expressing mouse KOR.
Experiment 6 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
2.4 ± 0.9 x 10-9 mol
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
The TRUPATH screening platform has been developed as an alternative to cAMP second messenger assays to minimize signal overamplification35. Intriguingly, in contrast to U50,488 and MP1104, but similar to the mixed-action KOR agonist pentazocine, DNCP--NalA(1) exhibited KOR partial agonism at Gi2, Gi3, GoA, GoB and Ggastducin subtypes with Emax values ranging from 48% to 77%, whereas it elicited full agonism at Gi1 and Gz with Emax values of 81% and 101%, respectively. The highest potency in the picomolar range was observed at Gz subtype for DNCP--NalA(1), U50,488 and MP1104, while pentazocine revealed the least variation in potency and efficacy across the transducerome.

   Click to Show/Hide
In Vivo Model Experiments were performed in male SWISS mice. Radioligand binding (n=3) and functional cAMP assays (n=3-4) of DNCP-beta-NalA conjugates were performed on HEK293T cell membranes stably expressing mouse KOR.
Experiment 7 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
3.1 ± 1.5 x 10-8 mol
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
The TRUPATH screening platform has been developed as an alternative to cAMP second messenger assays to minimize signal overamplification35. Intriguingly, in contrast to U50,488 and MP1104, but similar to the mixed-action KOR agonist pentazocine, DNCP--NalA(1) exhibited KOR partial agonism at Gi2, Gi3, GoA, GoB and Ggastducin subtypes with Emax values ranging from 48% to 77%, whereas it elicited full agonism at Gi1 and Gz with Emax values of 81% and 101%, respectively. The highest potency in the picomolar range was observed at Gz subtype for DNCP--NalA(1), U50,488 and MP1104, while pentazocine revealed the least variation in potency and efficacy across the transducerome.

   Click to Show/Hide
In Vivo Model Experiments were performed in male SWISS mice. Radioligand binding (n=3) and functional cAMP assays (n=3-4) of DNCP-beta-NalA conjugates were performed on HEK293T cell membranes stably expressing mouse KOR.
Revealed Based on the Cell Line Data
Click To Hide/Show 5 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
2.0 ± 0.1 x 10-9 mol
Evaluation Method Potency/efficacy cAMP assay)
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
We obtained four DNCP--NalA conjugates (1-4); the conjugation of DNCP (35) and DNCP (36) was unsuccessful. DNCP--NalA conjugates (1-4) were pharmacologically characterized via radioligand binding and functional cAMP assays to investigate their affinity, potency and efficacy at the mouse KOR. The DNCP--NalA conjugates exhibited affinities in the low nanomolar range, with DNCP--NalA(1) being the strongest binder at KOR with a Ki value of 3.9 nM, as compared to -NalA, which has an affinity Ki of 72 nM. All four DNCP--NalA conjugates were full agonists at KOR (Emax = 89-101%), while -NalA alone was only a partial agonist with an EC50 of 130 nM and Emax of 61%. The most potent conjugates were DNCP--NalA(1) and (4) with EC50 values of 2.0 nM and 1.0 nM, respectively. DNCP--NalA(2) and DNCP--NalA(3) showed agonist activities at KOR with EC50 values of 7.5 and 14 nM in cAMP assay, respectively, while their Ki values were 31 and 24 nM in radioligand binding assay, respectively. Receptor reserve may account for this discrepancy between potency and affinity values of DNCP--NalA(2) and DNCP--NalA(4) which can be observed in functional GPCR assays with opioid receptors30. The higher potency and efficacy of the conjugates at KOR compared to -NalA can be attributed to interactions of the macrocycles with the ECL2 region as described later.

   Click to Show/Hide
In Vitro Model Normal HEK-293T cell CVCL_0063
Experiment 2 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
5.5 ± 1.7 x 10-9 mol
Evaluation Method [35S]GTPγS binding assay
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
Next, we determined the opioid receptor subtype selectivity profile of DNCP--NalA(1) in radioligand binding assays with membrane preparations from HEK293 cells stably expressing the mouse MOR and DOR, and CHO cells stably expressing human nociceptin (NOP) receptor. Herein, DNCP--NalA(1) bound to mouse MOR and DOR with Ki values of 5.4 and 318 nM, respectively, supporting an ~80-fold selectivity for KOR over DOR whereas it bound to the human NOP with a Ki value of ~1.3 μM, thus having an ~330-fold selectivity for KOR over NOP receptor. In the functional cAMP assay, DNCP--NalA(1) was inactive at both mouse MOR and DOR up to 10 μM. This was confirmed at the human MOR and DOR in the [35S]GTPγS binding assay. We next determined the mechanism of antagonism of DNCP--NalA(1) by measuring adenylyl cyclase-mediated cAMP inhibition and [35S]GTPγS binding at mouse and human MOR, respectively, using Schild regression analysis. The MOR expressed in HEK293 and CHO cells was activated by DAMGO in the absence and presence of increasing concentrations of DNCP--NalA(1). We observed a rightward shift of the concentration-response curves of DAMGO in cAMP and [35S]GTPγS binding assays. Schild analysis of DNCP--NalA(1) exhibited linear regression slopes of 0.9 and 1.5 and pA2 values of 9.1 and 7.9 in cAMP and [35S]GTPγS binding assays, respectively, which corresponds to an average functional affinity of 0.8 and 13 nM, respectively, thus demonstrating the competitive antagonism of the DNCP--NalA(1) at MOR.

   Click to Show/Hide
In Vitro Model Normal CHO cell CVCL_0213
Experiment 3 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
2.2 ± 1.3 x 10-8 mol
Evaluation Method Potency/efficacy β-arrestin-2 recruitment assay
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
We obtained four DNCP--NalA conjugates (1-4); the conjugation of DNCP (35) and DNCP (36) was unsuccessful. DNCP--NalA conjugates (1-4) were pharmacologically characterized via radioligand binding and functional cAMP assays to investigate their affinity, potency and efficacy at the mouse KOR. The DNCP--NalA conjugates exhibited affinities in the low nanomolar range, with DNCP--NalA(1) being the strongest binder at KOR with a Ki value of 3.9 nM, as compared to -NalA, which has an affinity Ki of 72 nM. All four DNCP--NalA conjugates were full agonists at KOR (Emax = 89-101%), while -NalA alone was only a partial agonist with an EC50 of 130 nM and Emax of 61%. The most potent conjugates were DNCP--NalA(1) and (4) with EC50 values of 2.0 nM and 1.0 nM, respectively. DNCP--NalA(2) and DNCP--NalA(3) showed agonist activities at KOR with EC50 values of 7.5 and 14 nM in cAMP assay, respectively, while their Ki values were 31 and 24 nM in radioligand binding assay, respectively. Receptor reserve may account for this discrepancy between potency and affinity values of DNCP--NalA(2) and DNCP--NalA(4) which can be observed in functional GPCR assays with opioid receptors30. The higher potency and efficacy of the conjugates at KOR compared to -NalA can be attributed to interactions of the macrocycles with the ECL2 region as described later.

   Click to Show/Hide
In Vitro Model Normal HEK-293T cell CVCL_0063
Experiment 4 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
2.8 ± 0.7 x 10-8 mol
Evaluation Method Potency/efficacy β-arrestin-1 recruitment assay
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
We obtained four DNCP--NalA conjugates (1-4); the conjugation of DNCP (35) and DNCP (36) was unsuccessful. DNCP--NalA conjugates (1-4) were pharmacologically characterized via radioligand binding and functional cAMP assays to investigate their affinity, potency and efficacy at the mouse KOR. The DNCP--NalA conjugates exhibited affinities in the low nanomolar range, with DNCP--NalA(1) being the strongest binder at KOR with a Ki value of 3.9 nM, as compared to -NalA, which has an affinity Ki of 72 nM. All four DNCP--NalA conjugates were full agonists at KOR (Emax = 89-101%), while -NalA alone was only a partial agonist with an EC50 of 130 nM and Emax of 61%. The most potent conjugates were DNCP--NalA(1) and (4) with EC50 values of 2.0 nM and 1.0 nM, respectively. DNCP--NalA(2) and DNCP--NalA(3) showed agonist activities at KOR with EC50 values of 7.5 and 14 nM in cAMP assay, respectively, while their Ki values were 31 and 24 nM in radioligand binding assay, respectively. Receptor reserve may account for this discrepancy between potency and affinity values of DNCP--NalA(2) and DNCP--NalA(4) which can be observed in functional GPCR assays with opioid receptors30. The higher potency and efficacy of the conjugates at KOR compared to -NalA can be attributed to interactions of the macrocycles with the ECL2 region as described later.

   Click to Show/Hide
In Vitro Model Normal HEK-293T cell CVCL_0063
Experiment 5 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effective Concentration (EC50)
31 ± 15 μM
Evaluation Method [35S]GTPγS binding assay
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

   Click to Show/Hide
Description
Next, we determined the opioid receptor subtype selectivity profile of DNCP--NalA(1) in radioligand binding assays with membrane preparations from HEK293 cells stably expressing the mouse MOR and DOR, and CHO cells stably expressing human nociceptin (NOP) receptor. Herein, DNCP--NalA(1) bound to mouse MOR and DOR with Ki values of 5.4 and 318 nM, respectively, supporting an ~80-fold selectivity for KOR over DOR whereas it bound to the human NOP with a Ki value of ~1.3 μM, thus having an ~330-fold selectivity for KOR over NOP receptor. In the functional cAMP assay, DNCP--NalA(1) was inactive at both mouse MOR and DOR up to 10 μM. This was confirmed at the human MOR and DOR in the [35S]GTPγS binding assay. We next determined the mechanism of antagonism of DNCP--NalA(1) by measuring adenylyl cyclase-mediated cAMP inhibition and [35S]GTPγS binding at mouse and human MOR, respectively, using Schild regression analysis. The MOR expressed in HEK293 and CHO cells was activated by DAMGO in the absence and presence of increasing concentrations of DNCP--NalA(1). We observed a rightward shift of the concentration-response curves of DAMGO in cAMP and [35S]GTPγS binding assays. Schild analysis of DNCP--NalA(1) exhibited linear regression slopes of 0.9 and 1.5 and pA2 values of 9.1 and 7.9 in cAMP and [35S]GTPγS binding assays, respectively, which corresponds to an average functional affinity of 0.8 and 13 nM, respectively, thus demonstrating the competitive antagonism of the DNCP--NalA(1) at MOR.

   Click to Show/Hide
In Vitro Model Normal CHO cell CVCL_0213
References
Ref 1 Design and structural validation of peptide-drug conjugate ligands of the kappa-opioid receptor. Nat Commun. 2023 Dec 6;14(1):8064. doi: 10.1038/s41467-023-43718-w.