General Information of This Peptide-drug Conjugate (PDC)
PDC ID
PDC_00126
PDC Name
De Novo Cyclic Peptide (DNCP)-β-naloxamine (NalA) conjugates 2
PDC Status
Investigative
Indication
In total 1 Indication(s)
Pain
Structure
Peptide Name
tNeslCSf
 Peptide Info 
Receptor Name
Kappa-type opioid receptor (OPRK1)
 Receptor Info 
Drug Name
β-Naloxamine
 Drug Info 
Therapeutic Target
Kappa-type opioid receptor (OPRK1)
 Target Info 
Linker Name
Amide bond
 Linker Info 
Peptide Modified Type
Cyclization modification
Modified Segment
Side-chain cyclization
Formula
C57H77N11O18S
#Ro5 Violations (Lipinski): 5 Molecular Weight 1236.369
Lipid-water partition coefficient (xlogp) -4.1699
Hydrogen Bond Donor Count (hbonddonor) 16
Hydrogen Bond Acceptor Count (hbondacc) 19
Rotatable Bond Count (rotbonds) 23
Full List of Activity Data of This Peptide-drug Conjugate
Revealed Based on the Cell Line Data
Click To Hide/Show 1 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Pain
Efficacy Data Half Maximal Effect Concentration (EC50)
7.5 ± 0.6 x 10-9 mol
Evaluation Method Potency/efficacy cAMP assay
MOA of PDC
Here, we exploit the crystal structure of KOR bound to the dual KOR/delta-opioid receptor (DOR) epoxymorphinan opioid agonist MP11048 and use the Rosetta protein and peptide design software to computationally design peptide-small molecule conjugates targeting KOR. Utilizing the high affinity interaction of MP1104 with KOR as an anchor to initiate the design calculations, we seek to computationally design thioether cyclic peptides that interact with ECL2 and ECL3 of the receptor.

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Description
We obtained four DNCP--NalA conjugates (1-4); the conjugation of DNCP (35) and DNCP (36) was unsuccessful. DNCP--NalA conjugates (1-4) were pharmacologically characterized via radioligand binding and functional cAMP assays to investigate their affinity, potency and efficacy at the mouse KOR. The DNCP--NalA conjugates exhibited affinities in the low nanomolar range, with DNCP--NalA(1) being the strongest binder at KOR with a Ki value of 3.9 nM, as compared to -NalA, which has an affinity Ki of 72 nM. All four DNCP--NalA conjugates were full agonists at KOR (Emax = 89-101%), while -NalA alone was only a partial agonist with an EC50 of 130 nM and Emax of 61%. The most potent conjugates were DNCP--NalA(1) and (4) with EC50 values of 2.0 nM and 1.0 nM, respectively. DNCP--NalA(2) and DNCP--NalA(3) showed agonist activities at KOR with EC50 values of 7.5 and 14 nM in cAMP assay, respectively, while their Ki values were 31 and 24 nM in radioligand binding assay, respectively. Receptor reserve may account for this discrepancy between potency and affinity values of DNCP--NalA(2) and DNCP--NalA(4) which can be observed in functional GPCR assays with opioid receptors30. The higher potency and efficacy of the conjugates at KOR compared to -NalA can be attributed to interactions of the macrocycles with the ECL2 region as described later.

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In Vitro Model Normal HEK-293T cell CVCL_0063
References
Ref 1 Design and structural validation of peptide-drug conjugate ligands of the kappa-opioid receptor. Nat Commun. 2023 Dec 6;14(1):8064. doi: 10.1038/s41467-023-43718-w.