General Information of This Peptide
Peptide ID
PEP00170
Peptide Name
BCY6099
Structure
Peptide Type
Cyclic (Bicycle)
Receptor Name
Ephrin type-A receptor 2 (EPHA2)
 Receptor Info 
PDC Transmembrane Types Cell targeting peptides (CTPs)
Formula
C105H160N32O27S3
Isosmiles
CC(C)C[C@@H]1NC(=O)C2CSCCC(=O)N3CN(CN(C3)C(=O)CCSC[C@H](NC(=O)[C@H](CC(=O)O)NC(=O)C(CCCCNC(=N)N)NC(=O)[C@H](C)N)C(=O)N3C[C@H](O)C[C@H]3C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N3C=CC[C@H]3C(=O)N[C@@H](CC(C)C)C(=O)N2)C(=O)CCSCC(C(N)=O)NC(=O)[C@H](CCCCNC(=N)N)NC(=O)[C@H](Cc2c[nH]c3ccccc23)NC(=O)[C@H](CC(=O)O)NC(=O)[C@@H]2CCCN2C(=O)[C@H](Cc2c[nH]cn2)NC1=O
InChI
InChI=1S/C105H160N32O27S3/c1-53(2)34-65-90(151)126-71(38-59-44-113-49-117-59)101(162)135-29-16-23-77(135)98(159)125-70(42-84(145)146)93(154)121-68(37-58-43-116-62-19-11-10-18-61(58)62)92(153)119-64(21-13-15-28-115-105(111)112)89(150)128-73(86(108)147)46-165-31-24-80(140)132-50-133-52-134(51-132)82(142)26-33-167-48-75(130-94(155)69(41-83(143)144)122-88(149)63(118-87(148)57(9)106)20-12-14-27-114-104(109)110)103(164)137-45-60(138)39-78(137)99(160)124-67(36-55(5)6)95(156)131-85(56(7)8)100(161)127-72(40-79(107)139)102(163)136-30-17-22-76(136)97(158)123-66(35-54(3)4)91(152)129-74(96(157)120-65)47-166-32-25-81(133)141/h10-11,17-19,30,43-44,49,53-57,60,63-78,85,116,138H,12-16,20-29,31-42,45-48,50-52,106H2,1-9H3,(H2,107,139)(H2,108,147)(H,113,117)(H,118,148)(H,119,153)(H,120,157)(H,121,154)(H,122,149)(H,123,158)(H,124,160)(H,125,159)(H,126,151)(H,127,161)(H,128,150)(H,129,152)(H,130,155)(H,131,156)(H,143,144)(H,145,146)(H4,109,110,114)(H4,111,112,115)/t57-,60+,63?,64-,65-,66-,67-,68-,69-,70-,71-,72-,73?,74?,75-,76-,77-,78-,85-/m0/s1
InChIKey
WHONNPPIXXHMCB-AMRGXIBFSA-N
Pharmaceutical Properties
Molecule Weight
2398.833
Polar area
904.56
Complexity
2397.129281
xlogp Value
-6.94186
Heavy Count
167
Rot Bonds
34
Hbond acc
32
Hbond Donor
28
The Activity Data of This Peptide
Peptide Activity Information 1 [1]
KD 5.7 ± 0.9 nmol/L
Binding Affinity Assay
Binding affinities were determined using a fluorescence polarization competition assay and surface plasmon resonance assays using conventional methods.
Each Peptide-drug Conjugate Related to This Peptide
Full Information of The Activity Data of The PDC(s) Related to This Peptide
BT5528 [Phase 1/2]
Discovered Using Cell Line-derived Xenograft Model
Click To Hide/Show 2 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Fibrosarcoma
Efficacy Data Tumor volume
1200 mm3
Administration Time 20 day
Administration Dosage 0.167 mg/kg every week
MOA of PDC
Here we describe the development of BT5528, a bicyclic peptide (Bicycle) conjugated to the auristatin derivative maleimidocaproyl-monomethyl auristatin E to generate the Bicycle toxin conjugate BT5528. There are two potential mechanism of BT5528 bystander activity: extracellular linker cleavage and toxin penetration into neighboring cells, or receptor internalization and intracellular linker cleavage followed by release of cell penetrant toxin from lysed cells. The available data do not allow us to distinguish between these two mechanisms and it seems likely that BT5528 activity is mediated by toxin release following a combination of intracellular and extracellular linker cleavage.

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Description
BT5528 is efficacious in the PC3 xenograft model but control BTCs with noncleavable linkers and non-cell penetrant toxins lack comparable efficacy. A, The nonbinding BTC, BCY8245, is less active than BT5528 in the PC3 model (group mean ± SEM, n = 5) at both 0.5 and 0.0167 mg/kg dosing level (*, P < 0.05; **, P < 0.01; two-way ANOVA with Sidak's multiple comparisons test). B, Replacement of the cell penetrant toxin (MMAE: BT5528) with the non-cell penetrant toxin (MMAF: BCY10188) reduces activity in the PC3 model at 3, 1, and 0.33 mg/kg (group mean ± SEM; n = 5; *, P < 0.05; **, P < 0.01; two-way ANOVA with Sidak's multiple comparisons test). C, noncleavable linker chemistry abolishes activity in the HT1080 model; BCY6063, 10 mg/kg twice a week (group mean ± SEM, n = 3).

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In Vivo Model HT108 cells xenograft models in 6- to 8-week-old female balb/c nude or CB17-SCID mice.
In Vitro Model Fibrosarcoma HT-1080 cell CVCL_0317
Half life period 0.4 hour (Mouse); 0.3 hour (Rat); 0.6 hour (Nonhuman primate)
Experiment 2 Reporting the Activity Data of This PDC [1]
Indication Fibrosarcoma
Efficacy Data Tumor volume
2200 mm3
Administration Time 20 day
Administration Dosage 0.5 mg/kg every week
MOA of PDC
Here we describe the development of BT5528, a bicyclic peptide (Bicycle) conjugated to the auristatin derivative maleimidocaproyl-monomethyl auristatin E to generate the Bicycle toxin conjugate BT5528. There are two potential mechanism of BT5528 bystander activity: extracellular linker cleavage and toxin penetration into neighboring cells, or receptor internalization and intracellular linker cleavage followed by release of cell penetrant toxin from lysed cells. The available data do not allow us to distinguish between these two mechanisms and it seems likely that BT5528 activity is mediated by toxin release following a combination of intracellular and extracellular linker cleavage.

   Click to Show/Hide
Description
BT5528 is efficacious in the PC3 xenograft model but control BTCs with noncleavable linkers and non-cell penetrant toxins lack comparable efficacy. A, The nonbinding BTC, BCY8245, is less active than BT5528 in the PC3 model (group mean ± SEM, n = 5) at both 0.5 and 0.0167 mg/kg dosing level (*, P < 0.05; **, P < 0.01; two-way ANOVA with Sidak's multiple comparisons test). B, Replacement of the cell penetrant toxin (MMAE: BT5528) with the non-cell penetrant toxin (MMAF: BCY10188) reduces activity in the PC3 model at 3, 1, and 0.33 mg/kg (group mean ± SEM; n = 5; *, P < 0.05; **, P < 0.01; two-way ANOVA with Sidak's multiple comparisons test). C, noncleavable linker chemistry abolishes activity in the HT1080 model; BCY6063, 10 mg/kg twice a week (group mean ± SEM, n = 3).

   Click to Show/Hide
In Vivo Model HT108 cells xenograft models in 6- to 8-week-old female balb/c nude or CB17-SCID mice.
In Vitro Model Fibrosarcoma HT-1080 cell CVCL_0317
Half life period 0.4 hour (Mouse); 0.3 hour (Rat); 0.6 hour (Nonhuman primate)
References
Ref 1 MMAE Delivery Using the Bicycle Toxin Conjugate BT5528. Mol Cancer Ther. 2020 Jul;19(7):1385-1394. doi: 10.1158/1535-7163.MCT-19-1092. Epub 2020 May 12.