General Information of This Peptide
Peptide ID
PEP00123
Peptide Name
RGDKLAK
Structure
Sequence
RGDKLAK
Peptide Type
Cyclic
Receptor Name
Integrin alpha-V; Integrin beta-3 (ITGAV; ITGB3)
 Receptor Info 
PDC Transmembrane Types Cell-penetrating peptides (CPPs)
Formula
C33H60N12O9
Isosmiles
[H]NCCCC[C@@H]1NC(=O)[C@H](C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN[H])NC(=O)[C@H](CC(=O)O)NC(=O)CNC(=O)[C@H](CCC/N=C(\N)N[H])NC1=O
InChI
InChI=1S/C33H60N12O9/c1-18(2)15-23-31(53)40-19(3)27(49)42-21(9-4-6-12-34)29(51)43-20(11-8-14-38-33(36)37)28(50)39-17-25(46)41-24(16-26(47)48)32(54)44-22(30(52)45-23)10-5-7-13-35/h18-24H,4-17,34-35H2,1-3H3,(H,39,50)(H,40,53)(H,41,46)(H,42,49)(H,43,51)(H,44,54)(H,45,52)(H,47,48)(H4,36,37,38)/t19-,20-,21-,22-,23-,24-/m0/s1
InChIKey
SIEBFGSFCKANAJ-BTNSXGMBSA-N
Pharmaceutical Properties
Molecule Weight
768.918
Polar area
357.44
Complexity
768.4606215
xlogp Value
-4.1227
Heavy Count
54
Rot Bonds
18
Hbond acc
11
Hbond Donor
12
Each Peptide-drug Conjugate Related to This Peptide
Full Information of The Activity Data of The PDC(s) Related to This Peptide
CPP-SA-PTX [Investigative]
Revealed Based on the Cell Line Data
Click To Hide/Show 2 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Malignant glioblastoma
Efficacy Data Half Maximal Effective Concentration (EC50)
20.55 ± 1.02 nM
Administration Time 24 h
Evaluation Method MTT assay
MOA of PDC
A highly sensitive, nontoxic, hydrophilic cell-penetrating peptide (CPP = c[RGDKLAK]) was selected for the construction of an effective peptide-drug conjugate (PDC). A hydrophobic drug paclitaxel (PTX) was successfully conjugated with CPP via ester linkage with succinic acid (SA) as a pH-cleavable linker moiety. The characterization techniques employed in this study indicate the >95% purity of the resulting PDC (CPP-SA-PTX). The in vitro studies show that our proposed PDC exhibits enhanced stability (˜90%) and cytotoxicity (EC50 = 8.32 ± 0.09 nM). Besides the excellent solubility of PDC in water, the PTX effect on positive β-tubulin-III indicates that the drug releases retained pharmacological properties. Additionally, in vivo, therapeutic-dose treatment reveals the prominent tumor-growth inhibitory effects (2.82-3.24-fold) of PDC in tumor mice models. Subsequently, these observations confirmed that our novel-designed PDC (CPP-SA-PTX) adduct may serve as a promising therapeutic agent to treat glioblastoma.

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Description
Furthermore, it was also observed that PDC shows time-dependent cytotoxicity against U87MG cells, as at 12 h drug treatment. PDC shows a slightly lower inhibitory effect on cell survival (EC50 = 25.82 ± 0.31 nM) than PTX alone (EC50 = 12.25 ± 0.13 nM), and CPP-SA alone shows higher EC50 = 54.37 ± 0.24 in U87MG cells. Besides this, it was previously observed that CPP-treated healthy VERO cells showed 88.05 ± 0.86% viable cells even using 10 uM concentration, indicating the specificity of CPP for glioblastoma cells. However, at 24 h incubation period, our PDC shows a significantly enhanced cell survival inhibitory effect with EC50 = 8.32 ± 0.09 nM, suggesting the delayed effect of PDC because of the time required for the intracellular pH to cause maximal cleavage of PTX from the PDC. Moreover, it also shows that CPP-SA has a lower cytotoxicity effect on glioblastoma cells compared with PTX alone and PDC, indicating its specificity as a carrier and selectivity for integrin receptors overexpressed on the cell surface. Additionally, we have also studied the potential of our novel-designed PDC to internalize into PTX-resistant glioblastoma (U87MG-PR) cells to show cytotoxic activity upon intracellular cleavage of PTX from CPP. The data presented in Figure 3b reveal approximately 15% viability increases in U87MG-PR cells compared with parent U87MG cells. It can be seen in the inset in Figure 3b that PTX alone (EC50 = 41.3 ± 1.5 nM) showed significantly 2-fold reduced cytotoxic activity in U87MG-PR cells in comparison with our novel-designed PDC having EC50 = 20.55 ± 1.02 nM. It was also observed in Figure 3b that at lower concentrations (0-10 nM) the viable cell count was ˜75%; however, it significantly decreased to ˜20% viability with an increase in concentration (40 nM) of the test samples, highlighting the dose-dependent cytotoxicity behavior of PDC in a 24 h incubation period.

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In Vitro Model Glioblastoma U87MG-PR cell CVCL_0022
Experiment 2 Reporting the Activity Data of This PDC [1]
Indication Malignant glioblastoma
Efficacy Data Half Maximal Effective Concentration (EC50)
25.82 ± 0.31 nM
Administration Time 24 h
Evaluation Method MTT assay
MOA of PDC
A highly sensitive, nontoxic, hydrophilic cell-penetrating peptide (CPP = c[RGDKLAK]) was selected for the construction of an effective peptide-drug conjugate (PDC). A hydrophobic drug paclitaxel (PTX) was successfully conjugated with CPP via ester linkage with succinic acid (SA) as a pH-cleavable linker moiety. The characterization techniques employed in this study indicate the >95% purity of the resulting PDC (CPP-SA-PTX). The in vitro studies show that our proposed PDC exhibits enhanced stability (˜90%) and cytotoxicity (EC50 = 8.32 ± 0.09 nM). Besides the excellent solubility of PDC in water, the PTX effect on positive β-tubulin-III indicates that the drug releases retained pharmacological properties. Additionally, in vivo, therapeutic-dose treatment reveals the prominent tumor-growth inhibitory effects (2.82-3.24-fold) of PDC in tumor mice models. Subsequently, these observations confirmed that our novel-designed PDC (CPP-SA-PTX) adduct may serve as a promising therapeutic agent to treat glioblastoma.

   Click to Show/Hide
Description
Furthermore, it was also observed that PDC shows time-dependent cytotoxicity against U87MG cells, as at 12 h drug treatment. PDC shows a slightly lower inhibitory effect on cell survival (EC50 = 25.82 ± 0.31 nM) than PTX alone (EC50 = 12.25 ± 0.13 nM), and CPP-SA alone shows higher EC50 = 54.37 ± 0.24 in U87MG cells. Besides this, it was previously observed that CPP-treated healthy VERO cells showed 88.05 ± 0.86% viable cells even using 10 uM concentration, indicating the specificity of CPP for glioblastoma cells. However, at 24 h incubation period, our PDC shows a significantly enhanced cell survival inhibitory effect with EC50 = 8.32 ± 0.09 nM, suggesting the delayed effect of PDC because of the time required for the intracellular pH to cause maximal cleavage of PTX from the PDC. Moreover, it also shows that CPP-SA has a lower cytotoxicity effect on glioblastoma cells compared with PTX alone and PDC, indicating its specificity as a carrier and selectivity for integrin receptors overexpressed on the cell surface. Additionally, we have also studied the potential of our novel-designed PDC to internalize into PTX-resistant glioblastoma (U87MG-PR) cells to show cytotoxic activity upon intracellular cleavage of PTX from CPP. The data presented in Figure 3b reveal approximately 15% viability increases in U87MG-PR cells compared with parent U87MG cells. It can be seen in the inset in Figure 3b that PTX alone (EC50 = 41.3 ± 1.5 nM) showed significantly 2-fold reduced cytotoxic activity in U87MG-PR cells in comparison with our novel-designed PDC having EC50 = 20.55 ± 1.02 nM. It was also observed in Figure 3b that at lower concentrations (0-10 nM) the viable cell count was ˜75%; however, it significantly decreased to ˜20% viability with an increase in concentration (40 nM) of the test samples, highlighting the dose-dependent cytotoxicity behavior of PDC in a 24 h incubation period.

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In Vitro Model Glioblastoma U-87MG cell CVCL_0022
References
Ref 1 Identification of a pH-Responsive Peptide-Paclitaxel Conjugate as a Novel Drug with Improved Therapeutic Potential. J Med Chem. 2023 Jun 22;66(12):8324-8337. doi: 10.1021/acs.jmedchem.3c00382. Epub 2023 Jun 7.