General Information of This Drug
Drug ID DRG00063
Drug Name Pyrrolobenzodiazepine (PBD) dimer
Target(s) Human Deoxyribonucleic acid (hDNA)  Target Info 
Structure
Formula
C33H36N4O6
#Ro5 Violations (Lipinski): 2 Molecular Weight (mw) 584.673
Lipid-water partition coefficient (xlogp) 6.0003
Hydrogen Bond Donor Count (hbonddonor) 0
Hydrogen Bond Acceptor Count (hbondacc) 8
Rotatable Bond Count (rotbonds) 10
Canonical smiles
[H]C12C=Nc3cc(OCCCCCOc4cc5c(cc4OC)C(=O)N4C=C(C)CC4([H])C=N5)c(OC)cc3C(=O)N1C=C(C)C2
InChI
InChI=1S/C33H36N4O6/c1-20-10-22-16-34-26-14-30(28(40-3)12-24(26)32(38)36(22)18-20)42-8-6-5-7-9-43-31-15-27-25(13-29(31)41-4)33(39)37-19-21(2)11-23(37)17-35-27/h12-19,22-23H,5-11H2,1-4H3/t22-,23-/m0/s1
InChIKey
YMTZZJOPSATRTO-GOTSBHOMSA-N
Each Peptide-drug Conjugate Related to This Drug
Full Information of The Activity Data of The PDC(s) Related to This Drug
SG3511 [Investigative]
Discovered Using Cell Line-derived Xenograft Model
Click To Hide/Show 5 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 34% (Day 28)
Evaluation Method Tumor volume detection assay
Administration Time Bi-weekly for 4 weeks
Administration Dosage 20 µg/kg
MOA of PDC
Non-targeting SG3511 also produced a significant increase in apoptosis and DNA damage (P<0.05) again, probably as a result of the inherent lipophilicity of tesirine, but there was no significant change in tumor cell number, as measured by tumour cell area, CK-expression and confirmed with E-cadherin expression.
Description
SG3299 significantly reduced Panc0403/PS1 xenograft tumor growth by 75.8±6% (P<0.001) compared with PBS treatment and by 60.4±9.8% (P<0.05) compared with SG3511 therapy.
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Pbeta6 xenograft tumours.
In Vitro Model Pancreatic ductal adenocarcinoma Panc 04.03 PS1 cell CVCL_1636
Experiment 2 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 34.8 ± 4.6% (Day 28)
Evaluation Method Tumor volume detection assay
Administration Time T hrice weekly for 4 consecutive weeks
Administration Dosage 10 µg/kg
MOA of PDC
Non-targeting SG3511 also produced a significant increase in apoptosis and DNA damage (P<0.05) again, probably as a result of the inherent lipophilicity of tesirine, but there was no significant change in tumor cell number, as measured by tumour cell area, CK-expression and confirmed with E-cadherin expression.
Description
Tumors treated with SG3511 and SG3299 exhibited significant reductions in size (P<0.0001, 53.9±23.7% and 34.8±4.6% after 21 days respectively) but there was no significant difference in the effect of either treatment (P=0.24, after 30 days).
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Ppuro xenograft tumours.
In Vitro Model Amelanotic melanoma A375P-puro cell CVCL_5F66
Experiment 3 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 56.9 ± 16.2% (Day 28)
Evaluation Method Tumor volume detection assay
Administration Time T hrice weekly for 4 consecutive weeks
Administration Dosage 10 µg/kg
MOA of PDC
Non-targeting SG3511 also produced a significant increase in apoptosis and DNA damage (P<0.05) again, probably as a result of the inherent lipophilicity of tesirine, but there was no significant change in tumor cell number, as measured by tumour cell area, CK-expression and confirmed with E-cadherin expression.
Description
In contrast, both SG3299 and SG3511 reduced A375P6 tumor growth compared with PBS treatment (79±7% and 56.9±16.2% respectively, P<0.0001) and SG3299 reduced growth by 2.3-fold more than SG3511 (P<0.0001).
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Pbeta6 xenograft tumours.
In Vitro Model Amelanotic melanoma A375P-beta6 cell CVCL_5F66
Experiment 4 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 75% (Day 35)
Evaluation Method Tumor volume detection assay
Administration Time T hrice weekly for 5 consecutive weeks
Administration Dosage 10 µg/kg
MOA of PDC
Non-targeting SG3511 also produced a significant increase in apoptosis and DNA damage (P<0.05) again, probably as a result of the inherent lipophilicity of tesirine, but there was no significant change in tumor cell number, as measured by tumour cell area, CK-expression and confirmed with E-cadherin expression.
Description
Capan-1 xenografts responded in a similar manner to A375P6 xenografts upon 10 ug/kg tri-weekly treatment, with significant growth inhibition with SG3511 and SG3299 (P<0.0001). Again, SG3299 inhibited tumor growth significantly more than SG3511 (P<0.0001).
In Vivo Model Athymic CD1Nu/Nu female mice bearing human Capan-1 xenograft tumours.
In Vitro Model Pancreatic ductal adenocarcinoma Capan-1 cell CVCL_0237
Experiment 5 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 96.1 ± 3.4% (Day 28)
Evaluation Method Tumor volume detection assay
Administration Time Bi-weekly for 4 weeks
Administration Dosage 25 µg/kg
MOA of PDC
Non-targeting SG3511 also produced a significant increase in apoptosis and DNA damage (P<0.05) again, probably as a result of the inherent lipophilicity of tesirine, but there was no significant change in tumor cell number, as measured by tumour cell area, CK-expression and confirmed with E-cadherin expression.
Description
Again, SG3299 significantly reduced Capan-1 tumor growth achieving 97.7±2% (P<0.0001) and 96.1±3.4% (P<0.0001) reductions compared to PBS and SG3511, respectively.
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Pbeta6 xenograft tumours.
In Vitro Model Pancreatic ductal adenocarcinoma Capan-1 cell CVCL_0237
Revealed Based on the Cell Line Data
Click To Hide/Show 2 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [2]
Indication Pancreatic cancer
Efficacy Data Half Maximal Inhibitory Concentration (IC50) 223 nM
Evaluation Method WST-1 assay
Administration Time 48 h
MOA of PDC
The integrin vβ6 is expressed on ˜85% of pancreatic cancers with minimal expression in healthy tissues, and thus is a valid therapeutic target. We previously developed the A20FMDV2 peptide that binds with high-affinity to vβ6. SG3299 is a peptide-toxin conjugate that conjugates A20FMDV2 to a synthetic pyrrolobenzodiazepine (PBD) dimer cytotoxic warhead with a cathepsin B-cleavable valine-alanine linker. We have shown that SG3299 is highly effective in subcutaneous pancreatic cancer xenografts in immunodeficient models, with prolonged survival and tumour eliminations.

   Click to Show/Hide
Description
The relative specificity of SG3299 for v6, and the in vitro cytotoxic effect of SG3299 on v6-expressing murine cancer cells was confirmed with a growth inhibition assay performed on TB32043mb6s2 and TB32043 cells (high & negative v6 expression respectively). Cell viability was evaluated with a WST-1 assay following treatment with 0-105 nM of SG3299 or SG3511. The IC50 of v6-targeted SG3299 in TB32043mb6s2 was over 15-fold lower than in TB32043 cells (24 nM vs 418 nM, p < 0.001). There was no significant difference in the IC50 values for the non-targeted SG3511 between TB32043mb6s2 and TB32043 cells (223 vs 300 nM, p = 0.17).

   Click to Show/Hide
In Vitro Model Pancreatic ductal adenocarcinoma Pancreatic ductal adenocarcinoma cell TB32043mb6s2 Homo sapiens
Experiment 2 Reporting the Activity Data of This PDC [2]
Indication Pancreatic cancer
Efficacy Data Half Maximal Inhibitory Concentration (IC50) 300 nM
Evaluation Method WST-1 assay
Administration Time 48 h
MOA of PDC
The integrin vβ6 is expressed on ˜85% of pancreatic cancers with minimal expression in healthy tissues, and thus is a valid therapeutic target. We previously developed the A20FMDV2 peptide that binds with high-affinity to vβ6. SG3299 is a peptide-toxin conjugate that conjugates A20FMDV2 to a synthetic pyrrolobenzodiazepine (PBD) dimer cytotoxic warhead with a cathepsin B-cleavable valine-alanine linker. We have shown that SG3299 is highly effective in subcutaneous pancreatic cancer xenografts in immunodeficient models, with prolonged survival and tumour eliminations.

   Click to Show/Hide
Description
The relative specificity of SG3299 for v6, and the in vitro cytotoxic effect of SG3299 on v6-expressing murine cancer cells was confirmed with a growth inhibition assay performed on TB32043mb6s2 and TB32043 cells (high & negative v6 expression respectively). Cell viability was evaluated with a WST-1 assay following treatment with 0-105 nM of SG3299 or SG3511. The IC50 of v6-targeted SG3299 in TB32043mb6s2 was over 15-fold lower than in TB32043 cells (24 nM vs 418 nM, p < 0.001). There was no significant difference in the IC50 values for the non-targeted SG3511 between TB32043mb6s2 and TB32043 cells (223 vs 300 nM, p = 0.17).

   Click to Show/Hide
In Vitro Model Pancreatic ductal adenocarcinoma Pancreatic ductal adenocarcinoma cell TB32043 Homo sapiens
SG3299 [Investigative]
Discovered Using Cell Line-derived Xenograft Model
Click To Hide/Show 5 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 53.9 ± 23.7%
Evaluation Method Tumor volume detection assay
Administration Time 28 days
Administration Dosage 10 µg/kg
MOA of PDC
SG3299 Treatment Reduces Pancreatic Tumor Growth by inducing DNA Damage and Apoptosis
Description
Tumors treated with SG3511 and SG3299 exhibited significant reductions in size (P<0.0001, 53.9±23.7% and 34.8±4.6% after 21 days respectively) but there was no significant difference in the effect of either treatment (P=0.24, after 30 days).
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Ppuro xenograft tumours.
In Vitro Model Amelanotic melanoma A375P-puro cell CVCL_5F66
Experiment 2 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 76%
Evaluation Method Tumor volume detection assay
Administration Time 28 days
Administration Dosage 20 µg/kg
MOA of PDC
SG3299 Treatment Reduces Pancreatic Tumor Growth by inducing DNA Damage and Apoptosis
Description
SG3299 significantly reduced Panc0403/PS1 xenograft tumor growth by 75.8±6% (P<0.001) compared with PBS treatment and by 60.4±9.8% (P<0.05) compared with SG3511 therapy.
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Pbeta6 xenograft tumours.
In Vitro Model Pancreatic ductal adenocarcinoma Panc 04.03 PS1 cell CVCL_1636
Experiment 3 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 79 ± 7%
Evaluation Method Tumor volume detection assay
Administration Time 28 days
Administration Dosage 10 µg/kg
MOA of PDC
SG3299 Treatment Reduces Pancreatic Tumor Growth by inducing DNA Damage and Apoptosis
Description
In contrast, both SG3299 and SG3511 reduced A375P6 tumor growth compared with PBS treatment (79±7% and 56.9±16.2% respectively, P<0.0001) and SG3299 reduced growth by 2.3-fold more than SG3511 (P<0.0001).
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Pbeta6 xenograft tumours.
In Vitro Model Amelanotic melanoma A375P-beta6 cell CVCL_5F66
Experiment 4 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 84%
Evaluation Method Tumor volume detection assay
Administration Time 35 days
Administration Dosage 10 µg/kg
MOA of PDC
SG3299 Treatment Reduces Pancreatic Tumor Growth by inducing DNA Damage and Apoptosis
Description
Capan-1 xenografts responded in a similar manner to A375P6 xenografts upon 10 ug/kg tri-weekly treatment, with significant growth inhibition with SG3511 and SG3299 (P<0.0001). Again, SG3299 inhibited tumor growth significantly more than SG3511 (P<0.0001).
In Vivo Model Athymic CD1Nu/Nu female mice bearing human Capan-1 xenograft tumours.
In Vitro Model Pancreatic ductal adenocarcinoma Capan-1 cell CVCL_0237
Experiment 5 Reporting the Activity Data of This PDC [1]
Indication Pancreatic ductal adenocarcinoma
Efficacy Data Tumor Growth Inhibition value (TGI) 97.7 ± 2
Evaluation Method Tumor volume detection assay
Administration Time Bi-weekly for 4 weeks
Administration Dosage 25 µg/kg
MOA of PDC
SG3299 Treatment Reduces Pancreatic Tumor Growth by inducing DNA Damage and Apoptosis
Description
Again, SG3299 significantly reduced Capan-1 tumor growth achieving 97.7±2% (P<0.0001) and 96.1±3.4% (P<0.0001) reductions compared to PBS and SG3511, respectively.
In Vivo Model Athymic CD1Nu/Nu female mice bearing human A375Pbeta6 xenograft tumours.
In Vitro Model Pancreatic ductal adenocarcinoma Capan-1 cell CVCL_0237
Revealed Based on the Cell Line Data
Click To Hide/Show 2 Activity Data Related to This Level
Experiment 1 Reporting the Activity Data of This PDC [2]
Indication Pancreatic cancer
Efficacy Data Half Maximal Inhibitory Concentration (IC50) 24 nM
Evaluation Method WST-1 assay
Administration Time 48 h
MOA of PDC
The integrin vβ6 is expressed on ˜85% of pancreatic cancers with minimal expression in healthy tissues, and thus is a valid therapeutic target. We previously developed the A20FMDV2 peptide that binds with high-affinity to vβ6. SG3299 is a peptide-toxin conjugate that conjugates A20FMDV2 to a synthetic pyrrolobenzodiazepine (PBD) dimer cytotoxic warhead with a cathepsin B-cleavable valine-alanine linker. We have shown that SG3299 is highly effective in subcutaneous pancreatic cancer xenografts in immunodeficient models, with prolonged survival and tumour eliminations.

   Click to Show/Hide
Description
The relative specificity of SG3299 for v6, and the in vitro cytotoxic effect of SG3299 on v6-expressing murine cancer cells was confirmed with a growth inhibition assay performed on TB32043mb6s2 and TB32043 cells (high & negative v6 expression respectively). Cell viability was evaluated with a WST-1 assay following treatment with 0-105 nM of SG3299 or SG3511. The IC50 of v6-targeted SG3299 in TB32043mb6s2 was over 15-fold lower than in TB32043 cells (24 nM vs 418 nM, p < 0.001). There was no significant difference in the IC50 values for the non-targeted SG3511 between TB32043mb6s2 and TB32043 cells (223 vs 300 nM, p = 0.17).

   Click to Show/Hide
In Vitro Model Pancreatic ductal adenocarcinoma Pancreatic ductal adenocarcinoma cell TB32043mb6s2 Homo sapiens
Experiment 2 Reporting the Activity Data of This PDC [2]
Indication Pancreatic cancer
Efficacy Data Half Maximal Inhibitory Concentration (IC50) 418 nM
Evaluation Method WST-1 assay
Administration Time 48 h
MOA of PDC
The integrin vβ6 is expressed on ˜85% of pancreatic cancers with minimal expression in healthy tissues, and thus is a valid therapeutic target. We previously developed the A20FMDV2 peptide that binds with high-affinity to vβ6. SG3299 is a peptide-toxin conjugate that conjugates A20FMDV2 to a synthetic pyrrolobenzodiazepine (PBD) dimer cytotoxic warhead with a cathepsin B-cleavable valine-alanine linker. We have shown that SG3299 is highly effective in subcutaneous pancreatic cancer xenografts in immunodeficient models, with prolonged survival and tumour eliminations.

   Click to Show/Hide
Description
The relative specificity of SG3299 for v6, and the in vitro cytotoxic effect of SG3299 on v6-expressing murine cancer cells was confirmed with a growth inhibition assay performed on TB32043mb6s2 and TB32043 cells (high & negative v6 expression respectively). Cell viability was evaluated with a WST-1 assay following treatment with 0-105 nM of SG3299 or SG3511. The IC50 of v6-targeted SG3299 in TB32043mb6s2 was over 15-fold lower than in TB32043 cells (24 nM vs 418 nM, p < 0.001). There was no significant difference in the IC50 values for the non-targeted SG3511 between TB32043mb6s2 and TB32043 cells (223 vs 300 nM, p = 0.17).

   Click to Show/Hide
In Vitro Model Pancreatic ductal adenocarcinoma Pancreatic ductal adenocarcinoma cell TB32043 Homo sapiens
References
Ref 1 Integrin v6-specific therapy for pancreatic cancer developed from foot-and-mouth-disease virus. Theranostics. 2020 Feb 12;10(7):2930-2942. doi: 10.7150/thno.38702. eCollection 2020.
Ref 2 Integrin-v6 targeted peptide-toxin therapy in a novel v6-expressing immunocompetent model of pancreatic cancer. Pancreatology. 2024 May;24(3):445-455. doi: 10.1016/j.pan.2024.02.013. Epub 2024 Feb 24.